A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2024-09-24, 16:00 CEST based on data in:
/home/akabetso/Desktop/Transcriptome/scRNA_Galaxy/scripts/STARsolo_Log.final.out/home/akabetso/Desktop/Transcriptome/scRNA_Galaxy/scripts/STARsolo_Log.out/home/akabetso/Desktop/Transcriptome/scRNA_Galaxy/scripts/STARsolo_Log.progress.out
General Statistics
| Sample Name | Aligned | Uniq aligned |
|---|---|---|
| STARsolo | 96.2% | 88.5% |
STAR
Universal RNA-seq aligner.URL: https://github.com/alexdobin/STARDOI: 10.1093/bioinformatics/bts635
Summary Statistics
Summary statistics from the STAR alignment
| Sample Name | Total Reads | Aligned | Uniq aligned | Avg. mapped len | Annotated splices | Mismatch rate | Del rate | Del len | Ins rate | Ins len |
|---|---|---|---|---|---|---|---|---|---|---|
| STARsolo | 7.7M | 96.2% | 88.5% | 89.3bp | 1.1M | 0.5% | 0.0% | 1.6bp | 0.0% | 1.4bp |